scipy的optimize.fmin和optimize.leastsq有什么区别?它们在这个示例页面中使用方式似乎基本相同。唯一的区别是,leastsq实际上会自行计算平方和(正如其名称所示),而使用fmin时必须手动计算。除此之外,这两个函数是否等效?
不同的算法在底层运行。
fmin使用单纯形法; leastsq使用最小二乘拟合。
仅补充一些信息,我正在开发一个模块来拟合双指数函数,leastsq和minimize之间的时间差似乎几乎是100倍。请查看下面的代码以获取更多详细信息。
我使用了一个双指数曲线,它是两个指数的和,模型函数有4个参数要拟合。S,f,D_star和D。
所有默认拟合参数都已使用
S [f e^(-x * D_star) + (1 - f) e^(-x * D)]
('Time taken for minimize:', 0.011617898941040039)
('Time taken for leastsq :', 0.0003180503845214844)
所使用的代码:
import numpy as np
from scipy.optimize import minimize, leastsq
from time import time
def ivim_function(params, bvals):
"""The Intravoxel incoherent motion (IVIM) model function.
S(b) = S_0[f*e^{(-b*D\*)} + (1-f)e^{(-b*D)}]
S_0, f, D\* and D are the IVIM parameters.
Parameters
----------
params : array
parameters S0, f, D_star and D of the model
bvals : array
bvalues
References
----------
.. [1] Le Bihan, Denis, et al. "Separation of diffusion
and perfusion in intravoxel incoherent motion MR
imaging." Radiology 168.2 (1988): 497-505.
.. [2] Federau, Christian, et al. "Quantitative measurement
of brain perfusion with intravoxel incoherent motion
MR imaging." Radiology 265.3 (2012): 874-881.
"""
S0, f, D_star, D = params
S = S0 * (f * np.exp(-bvals * D_star) + (1 - f) * np.exp(-bvals * D))
return S
def _ivim_error(params, bvals, signal):
"""Error function to be used in fitting the IVIM model
"""
return (signal - ivim_function(params, bvals))
def sum_sq(params, bvals, signal):
"""Sum of squares of the errors. This function is minimized"""
return np.sum(_ivim_error(params, bvals, signal)**2)
x0 = np.array([100., 0.20, 0.008, 0.0009])
bvals = np.array([0., 10., 20., 30., 40., 60., 80., 100.,
120., 140., 160., 180., 200., 220., 240.,
260., 280., 300., 350., 400., 500., 600.,
700., 800., 900., 1000.])
data = ivim_function(x0, bvals)
optstart = time()
opt = minimize(sum_sq, x0, args=(bvals, data))
optend = time()
time_taken = optend - optstart
print("Time taken for opt:", time_taken)
lstart = time()
lst = leastsq(_ivim_error,
x0,
args=(bvals, data),)
lend = time()
time_taken = lend - lstart
print("Time taken for leastsq :", time_taken)
print('Parameters estimated using minimize :', opt.x)
print('Parameters estimated using leastsq :', lst[0])