LLLLLLLLAATAALLLLALLLLLLAATAALLLATLLLLLAATAALLAALLLLLAATAALL
这个字符串中，子串LLLLLAATAALL重复出现了4次。我想查找类似于这样的子串，但是我不知道它们在主字符串中的起始位置、结束位置、数量和长度。
如果有Java工具可以寻找这种类型的内容，任何建议都将不胜感激。
nt
好的，我从这里获取了代码，并对其进行了修改，以便跟踪和打印最长重复子字符串。只需使用JUnit运行它即可。
/* Copyright (c) 2010 the authors listed at the following URL, and/or
the authors of referenced articles or incorporated external code:
http://en.literateprograms.org/Suffix_tree_(Java)?action=history&offset=20100123220137
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Retrieved from: http://en.literateprograms.org/Suffix_tree_(Java)?oldid=16641
*/
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import org.junit.Test;
public class SuffixTree {
@Test
public void sampleUsage() {
AbstractSuffixTree tree = new SimpleSuffixTree(
"LLLLLLLLAATAALLLLALLLLLLAATAALLLATLLLLLAATAALLAALLLLLAATAALL");
System.out.println("Longest repeating substring "
+ tree.best.printResult() + " repetitions=" + tree.best.visits
+ " length=" + tree.best.stringDepth);
}
}
abstract class AbstractSuffixTree {
SuffixTreeNode best;
String text = null;
SuffixTreeNode root = null;
int inputAlphabetSize = -1;
AbstractSuffixTree(String text) {
if (text.length() > 0 && text.charAt(text.length() - 1) == '$') {
this.text = text;
} else {
this.text = text + "$";
}
}
}
class SimpleSuffixTree extends AbstractSuffixTree {
public SimpleSuffixTree(String text) {
super(text);
constructTree();
}
private void constructTree() {
super.root = new SuffixTreeNode(this);
best = root;
char[] s = super.text.toCharArray();
for (int i = 0; i < s.length; i++) {
List<String> suffixList = new ArrayList<String>();
for (int k = i; k < s.length; k++) {
suffixList.add(s[k] + "");
}
super.root.addSuffix(suffixList, i + 1);
}
}
}
class CompactSuffixTree extends AbstractSuffixTree {
public CompactSuffixTree(SimpleSuffixTree simpleSuffixTree) {
super(simpleSuffixTree.text);
super.root = compactNodes(simpleSuffixTree.root, 0);
super.best = simpleSuffixTree.best;
}
private SuffixTreeNode compactNodes(SuffixTreeNode node, int nodeDepth) {
node.nodeDepth = nodeDepth;
for (SuffixTreeNode child : node.children) {
while (child.children.size() == 1) {
SuffixTreeNode grandchild = child.children.iterator().next();
child.incomingEdge.label += ", "
+ grandchild.incomingEdge.label;
child.stringDepth += grandchild.incomingEdge.label.length();
child.children = grandchild.children;
// for (SuffixTreeNode grandchild : child.children)
grandchild.parent = node;
}
child = compactNodes(child, nodeDepth + 1);
}
return node;
}
}
class SuffixTreeNode {
AbstractSuffixTree tree;
SuffixTreeEdge incomingEdge = null;
int nodeDepth = -1;
int label = -1;
Collection<SuffixTreeNode> children = null;
SuffixTreeNode parent = null;
int stringDepth;
int id = 0;
public static int c;
public int visits = 1;
public SuffixTreeNode(AbstractSuffixTree tree, SuffixTreeNode parent,
String incomingLabel, int depth, int label, int id) {
children = new ArrayList<SuffixTreeNode>();
incomingEdge = new SuffixTreeEdge(incomingLabel, label);
nodeDepth = depth;
this.label = label;
this.parent = parent;
stringDepth = parent.stringDepth + incomingLabel.length();
this.id = id;
this.tree = tree;
}
public SuffixTreeNode(AbstractSuffixTree tree) {
children = new ArrayList<SuffixTreeNode>();
nodeDepth = 0;
label = 0;
this.tree = tree;
}
public void addSuffix(List<String> suffix, int pathIndex) {
SuffixTreeNode insertAt = this;
insertAt = search(this, suffix);
insert(insertAt, suffix, pathIndex);
}
private SuffixTreeNode search(SuffixTreeNode startNode, List<String> suffix) {
if (suffix.isEmpty()) {
throw new IllegalArgumentException(
"Empty suffix. Probably no valid simple suffix tree exists for the input.");
}
Collection<SuffixTreeNode> children = startNode.children;
for (SuffixTreeNode child : children) {
if (child.incomingEdge.label.equals(suffix.get(0))) {
suffix.remove(0);
child.visits++;
if (child.visits > 1
&& child.stringDepth > tree.best.stringDepth) {
tree.best = child;
}
if (suffix.isEmpty()) {
return child;
}
return search(child, suffix);
}
}
return startNode;
}
private void insert(SuffixTreeNode insertAt, List<String> suffix,
int pathIndex) {
for (String x : suffix) {
SuffixTreeNode child = new SuffixTreeNode(tree, insertAt, x,
insertAt.nodeDepth + 1, pathIndex, id);
insertAt.children.add(child);
insertAt = child;
}
}
public String toString() {
StringBuilder result = new StringBuilder();
String incomingLabel = this.isRoot() ? "" : this.incomingEdge.label;
for (int i = 1; i <= this.nodeDepth; i++)
result.append("\t");
if (this.isRoot()) {
c = 1;
this.id = 1;
} else {
this.id = c;
result.append(this.parent.id + " -> ");
result.append(this.id + "[label=\"" + incomingLabel + "\"]" + "("
+ visits + "," + (stringDepth) + ")" + ";\n");
}
for (SuffixTreeNode child : children) {
c++;
child.id = c;
result.append(child.toString());
}
return result.toString();
}
public String printResult() {
if (parent == null) {
return "";
} else {
return this.parent.printResult() + this.incomingEdge.label;
}
}
public boolean isRoot() {
return this.parent == null;
}
public boolean isLeaf() {
return children.size() == 0;
}
}
class SuffixTreeEdge {
String label = null;
@SuppressWarnings("unused")
private int branchIndex = -1;
public SuffixTreeEdge(String label, int branchIndex) {
this.label = label;
this.branchIndex = branchIndex;
}
}
输出：
最长重复子串 LLLLLLAATAALLL 重复次数=2 长度=14
编辑：回答你的评论。
目前我只是跟踪最长重复的SuffixTreeNode（它是AbstractSuffixTree中的一个字段）。您可以修改它，使其跟踪按其stringDepth排序的节点SortedQueue。