我正在尝试在基于Linux的集群上安装R包FactoMineR,它需要nloptr,而nloptr又需要nlopt。仅使用install.packages("nloptr")
无法工作,并产生以下错误:
> install.packages("nloptr")
Installing package into ‘/beegfs/group/home/username/.R/3.3.2/R_LIBS_USER’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/nloptr_1.0.4.tar.gz'
Content type 'application/x-gzip' length 353957 bytes (345 KB)
==================================================
downloaded 345 KB
* installing *source* package ‘nloptr’ ...
** package ‘nloptr’ successfully unpacked and MD5 sums checked
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking for pkg-config... yes
configure: Now testing for NLopt header file.
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking nlopt.h usability... no
checking nlopt.h presence... no
checking for nlopt.h... no
configure: Need to download and build NLopt
trying URL 'http://ab-initio.mit.edu/nlopt/nlopt-2.4.2.tar.gz'
Error in download.file(url = "http://ab-initio.mit.edu/nlopt/nlopt-2.4.2.tar.gz", :
cannot open URL 'http://ab-initio.mit.edu/nlopt/nlopt-2.4.2.tar.gz'
Execution halted
/usr/bin/gtar: This does not look like a tar archive
gzip: stdin: unexpected end of file
/usr/bin/gtar: Child returned status 1
/usr/bin/gtar: Error is not recoverable: exiting now
Warning message:
In untar(tarfile = "nlopt-2.4.2.tar.gz") :
'/usr/bin/gtar -xf 'nlopt-2.4.2.tar.gz'' returned error code 2
configure: Starting to install library to /tmp/RtmpazbyAy/R.INSTALL2d6f734a93606/nloptr/nlopt-2.4.2
./configure: line 3325: cd: nlopt-2.4.2: No such file or directory
在这一点上,R会停止工作并需要重新启动。因此,我尝试手动安装nlopt并按照官方网站上的指南进行操作。我将所有内容安装在我的主文件夹中,因为我在集群上没有root权限。但是nloptr安装仍然失败,并出现了找不到nlopt的相同错误。此问题似乎也是如此,但是使用...
install.packages('nloptr', dependencies = TRUE,
configure.args = "--with-nlopt-cflags='-I/$HOME/include' --with-nlopt-libs='-L/$HOME/lib64 -lnlopt'")
仍然产生相同的错误。
文件夹 $HOME/include
包含以下文件: nlopt.f nlopt.h nlopt.hpp
,而 $HOME/lib64
包含以下内容: cmake/ libnlopt.so@ libnlopt.so.0@ libnlopt.so.0.9.0* pkgconfig/ python2.7/
。
我已经尝试了多次并使用了几个相关问题的提示,但迄今为止什么都没有起作用,任何提示都将不胜感激。谢谢!
编辑:有人有想法吗?
install.packages("devtools")
- Murali Podicheti