在Ubuntu 16.04 LTS上安装rgdal遇到的困难

Question

在Ubuntu 16.04 LTS上安装rgdal遇到的困难

8

我在寻找解决办法来避免重复的情况，但是没有找到。

我想要在 Ubuntu 16.04 LTS 上为 R 安装 'rgdal' 包。如果我在 R-studio 中编写以下代码：

install.packages("rgdal", type = "source")

出现以下错误;

Installing package into ‘/home/kocesat/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘rgdal’ is not available (for R version 3.2.3)

然后我尝试按照以下方式安装 libgdal1-dev 和 libproj-dev：

$ sudo apt-get install libgdal1-dev libproj-dev

它成功安装了dev文件。然后我尝试使用相同的命令在R-studio中再次安装"rgdal"，但仍然无法安装成功。

接着，我安装了homebrew并尝试使用以下命令获取gdal：

~$ brew install gdal

它返回了

Error: undefined method `rebuild' for    
#<BottleSpecification:0x000000015ddc60>
Please report this bug:
https://github.com/Linuxbrew/linuxbrew/blob/master/share/doc/homebrew  
/Troubleshooting.md#troubleshooting
/home/kocesat/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula  
/jpeg.rb:9:in `block in <class:Jpeg>'
/home/kocesat/.linuxbrew/Library/Homebrew/software_spec.rb:91:in  
`instance_eval'
/home/kocesat/.linuxbrew/Library/Homebrew/software_spec.rb:91:in `bottle'
/home/kocesat/.linuxbrew/Library/Homebrew/formula.rb:1729:in `bottle'
/home/kocesat/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula
/jpeg.rb:7:in `<class:Jpeg>'
/home/kocesat/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula
/jpeg.rb:1:in `load_formula'
/home/kocesat/.linuxbrew/Library/Homebrew/formulary.rb:21:in `module_eval'
/home/kocesat/.linuxbrew/Library/Homebrew/formulary.rb:21:in 
`load_formula'
/home/kocesat/.linuxbrew/Library/Homebrew/formulary.rb:34:in
`load_formula_from_path'
/home/kocesat/.linuxbrew/Library/Homebrew/formulary.rb:83:in `load_file'
/home/kocesat/.linuxbrew/Library/Homebrew/formulary.rb:74:in `klass'
/home/kocesat/.linuxbrew/Library/Homebrew/formulary.rb:70:in `get_formula'
/home/kocesat/.linuxbrew/Library/Homebrew/formulary.rb:207:in `factory'
/home/kocesat/.linuxbrew/Library/Homebrew/dependency.rb:32:in `to_formula'
/home/kocesat/.linuxbrew/Library/Homebrew/dependency.rb:93:in `block in   
expand'
/home/kocesat/.linuxbrew/Library/Homebrew/dependencies.rb:9:in `each'
/home/kocesat/.linuxbrew/Library/Homebrew/dependencies.rb:9:in `each'
/home/kocesat/.linuxbrew/Library/Homebrew/dependency.rb:80:in `expand'
/home/kocesat/.linuxbrew/Library/Homebrew/formula.rb:1223:in 
`recursive_dependencies'
/home/kocesat/.linuxbrew/Library/Homebrew/requirement.rb:196:in `expand'
/home/kocesat/.linuxbrew/Library/Homebrew/formula.rb:1229:in `recursive_requirements'
/home/kocesat/.linuxbrew/Library/Homebrew/formula_installer.rb:313:in `expand_requirements'
/home/kocesat/.linuxbrew/Library/Homebrew/formula_installer.rb:263:in `compute_dependencies'
/home/kocesat/.linuxbrew/Library/Homebrew/formula_installer.rb:130:in `verify_deps_exist'
/home/kocesat/.linuxbrew/Library/Homebrew/formula_installer.rb:123:in `prelude'
/home/kocesat/.linuxbrew/Library/Homebrew/cmd/install.rb:231:in `install_formula'
/home/kocesat/.linuxbrew/Library/Homebrew/cmd/install.rb:93:in `block in install'
/home/kocesat/.linuxbrew/Library/Homebrew/cmd/install.rb:93:in `each'
/home/kocesat/.linuxbrew/Library/Homebrew/cmd/install.rb:93:in `install'
/home/kocesat/.linuxbrew/Library/brew.rb:84:in `<main>'

现在，我应该做什么？非常感谢您的任何建议。

- kocesat

可能是如何在Ubuntu上永久修复Howbrew路径问题的重复问题。 - LuFFy

也许你可以尝试使用apt而不是linuxbrew http://www.sarasafavi.com/installing-gdalogr-on-ubuntu.html 此外，你的R版本有点旧了。你可能需要考虑更新它，因为最新的CRAN版本依赖于R > 3.3.0。https://cran.r-project.org/web/packages/rgdal/index.html - amatsuo_net

2个回答

1

如果您在这里是因为travis集成失败，请参见#5852。

language: r
sudo: false
cache: packages
addons:
  apt:
    packages:
      - libgdal-dev
      - libproj-dev

- JohnCoene

网页内容由stack overflow 提供, 点击上面的

可以查看英文原文，
原文链接

- Sébastien Rochette · Accepted Answer

以下是我用于在Ubuntu 16.04上安装最新的R-cran PPA存储库的步骤：

sudo add-apt-repository 'deb https://mirror.ibcp.fr/pub/CRAN/bin/linux/ubuntu xenial/' 
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
sudo apt-get update
sudo apt-get install libgdal1-dev libproj-dev libgeos-dev
sudo apt-get install r-base-core

根据您的位置，您可以使用另一个CRAN镜像： https://cran.r-project.org/mirrors.html

然后，install.packages("rgdal") 应该可以正常工作。

如果您想在Ubuntu LTS版本上获取最新的空间库，也可以使用ubuntugis PPA：https://launchpad.net/~ubuntugis/+archive/ubuntu/ppa

sudo add-apt-repository 'deb http://ppa.launchpad.net/ubuntugis/ppa/ubuntu xenial main' 
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 314DF160
sudo apt update
sudo apt upgrade